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Zentner Lab

Yeast colony PCR

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  1. Pick part of a colony into a PCR tube using a sterile pipet tip or toothpick. Mark the location of the picked colony with a dot and number on the bottom of the plate so you can go back and pick the rest of it to grow up for a glycerol stock if it is correct.

  2. Microwave picked colonies on high for 1 min.

  3. For each PCR, prepare the following reaction mix:

    Component Volume
    10X Taq buffer (NEB M0273L) 5 μL
    10 mM dNTPs (2.5 mM each) 1 μL
    10 μM forward primer 1 μL
    10 μM reverse primer 1 μL
    Taq polymerase (NEB M0273L) 0.5 μL
    H₂O 41.5 μL
  4. Add 50 μL PCR mix to each microwaved colony.

  5. Cycle using the following parameters:

    Step Temperature Time
    Initial denaturation 95C 5’
    Amplification (35 cycles) 95C 30”
      55C 30”
      68C 1’/kb
    Final extension 68C 5’
    Hold 10C
  6. Add 10 μL 6X loading dye, pipet up and down to mix, and load 10 μL on an agarose gel.